Package: MassWateR 2.1.5

Marcus Beck

MassWateR: Quality Control and Analysis of Massachusetts Water Quality Data

Methods for quality control and exploratory analysis of surface water quality data collected in Massachusetts, USA. Functions are developed to facilitate data formatting for the Water Quality Exchange Network <https://www.epa.gov/waterdata/water-quality-data-upload-wqx> and reporting of data quality objectives to state agencies. Quality control methods are from Massachusetts Department of Environmental Protection (2020) <https://www.mass.gov/orgs/massachusetts-department-of-environmental-protection>.

Authors:Marcus Beck [aut, cre], Jill Carr [aut], Ben Wetherill [aut]

MassWateR_2.1.5.tar.gz
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MassWateR_2.1.5.tgz(r-4.4-any)MassWateR_2.1.5.tgz(r-4.3-any)
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MassWateR.pdf |MassWateR.html✨
MassWateR/json (API)
NEWS

# Install 'MassWateR' in R:

install.packages('MassWateR', repos = c('https://massbays-tech.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/massbays-tech/masswater/issues

Datasets:

paramsMWR - Master parameter list and units for Characteristic Name column in results data
thresholdMWR - Master thresholds list for analysis of results data

On CRAN:

5.08 score 11 stars 9 scripts 832 downloads 43 exports 108 dependencies

Last updated 4 hours agofrom:f6559d519c. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 22 2024
R-4.5-win	OK	Nov 22 2024
R-4.5-linux	OK	Nov 22 2024
R-4.4-win	OK	Nov 22 2024
R-4.4-mac	OK	Nov 22 2024
R-4.3-win	OK	Nov 22 2024
R-4.3-mac	OK	Nov 22 2024

Exports:anlzMWRdate anlzMWRmap anlzMWRoutlier anlzMWRoutlierall anlzMWRseason anlzMWRsite checkMWRacc checkMWRfrecom checkMWRresults checkMWRsites checkMWRwqx formMWRacc formMWRfrecom formMWRresults formMWRwqx qcMWRacc qcMWRcom qcMWRfre qcMWRreview readMWRacc readMWRfrecom readMWRresults readMWRresultsview readMWRsites readMWRwqx tabMWRacc tabMWRcom tabMWRfre tabMWRwqx utilMWRfilter utilMWRfiltersurface utilMWRfre utilMWRhttpgrace utilMWRinput utilMWRinputcheck utilMWRlimits utilMWRoutlier utilMWRsumfun utilMWRsummary utilMWRthresh utilMWRtitle utilMWRvaluerange utilMWRyscale

Dependencies:abind askpass base64enc bslib cachem cellranger class classInt cli colorspace cpp11 crayon curl data.table DBI digest dplyr e1071 evaluate fansi farver fastmap flextable fontawesome fontBitstreamVera fontLiberation fontquiver fs gdtools generics ggplot2 ggrepel ggspatial glue gtable highr hms htmltools httr isoband jpeg jquerylib jsonlite KernSmooth knitr labeling lattice lifecycle lubridate magrittr maptiles MASS Matrix memoise mgcv mime munsell nlme officer openssl pillar pkgconfig png prettyunits progress proxy purrr R6 ragg rappdirs raster RColorBrewer Rcpp readxl rematch rlang rmarkdown rosm s2 sass scales sf slippymath sp stringi stringr sys systemfonts terra textshaping tibble tidyr tidyselect tidyterra timechange tinytex units utf8 uuid vctrs viridisLite withr wk writexl xfun xml2 yaml zip

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Analyze trends by date in results file	anlzMWRdate
Analyze results with maps	anlzMWRmap
Analyze outliers in results file	anlzMWRoutlier
Analyze outliers in results file for all parameters	anlzMWRoutlierall
Analyze seasonal trends in results file	anlzMWRseason
Analyze data by sites in results file	anlzMWRsite
Check data quality objective accuracy data	checkMWRacc
Check data quality objective frequency and completeness data	checkMWRfrecom
Check water quality monitoring results	checkMWRresults
Check site metadata file	checkMWRsites
Check water quality exchange (wqx) metadata input	checkMWRwqx
Format data quality objective accuracy data	formMWRacc
Format data quality objective frequency and completeness data	formMWRfrecom
Format water quality monitoring results	formMWRresults
Format WQX metadata input	formMWRwqx
Master parameter list and units for Characteristic Name column in results data	paramsMWR
Run quality control accuracy checks for water quality monitoring results	qcMWRacc
Run quality control completeness checks for water quality monitoring results	qcMWRcom
Run quality control frequency checks for water quality monitoring results	qcMWRfre
Create the quality control review report	qcMWRreview
Read data quality objectives for accuracy from an external file	readMWRacc
Read data quality objectives for frequency and completeness from an external file	readMWRfrecom
Read water quality monitoring results from an external file	readMWRresults
Create summary spreadsheet of the water quality monitoring results	readMWRresultsview
Read site metadata from an external file	readMWRsites
Read water quality exchange (wqx) metadata input from an external file	readMWRwqx
Create a formatted table of quality control accuracy checks	tabMWRacc
Create a formatted table of quality control completeness checks	tabMWRcom
Create a formatted table of quality control frequency checks	tabMWRfre
Create and save tables in a single workbook for WQX upload	tabMWRwqx
Master thresholds list for analysis of results data	thresholdMWR
Filter results data by parameter, date range, site, result attributes, and/or location group	utilMWRfilter
Filter results data to surface measurements	utilMWRfiltersurface
Prep results data for frequency checks	utilMWRfre
Load external file from remote source, fail gracefully	utilMWRhttpgrace
Utility function to import data as paths or data frames	utilMWRinput
Check if required inputs are present for a function	utilMWRinputcheck
Fill results data as BDL or AQL with appropriate values	utilMWRlimits
Identify outliers in a numeric vector	utilMWRoutlier
Verify summary function	utilMWRsumfun
Summarize a results data frame by a grouping variable	utilMWRsummary
Get threshold lines from thresholdMWR	utilMWRthresh
Format the title for analyze functions	utilMWRtitle
Check if incomplete range in 'Value Range' column	utilMWRvaluerange
Get logical value for y axis scaling	utilMWRyscale